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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
18
snATAC-seq
pCHi-C
17
total RNA-seq
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
37
DNA binding
29
DNA accessibility
17
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
43
May, 2021
23
February, 2023
16
January, 2021
6
May, 2022
Available data
6
bam
6
fastq
6
txt
Organism
88
Homo sapiens
Biosample type
42
in vitro differentiated cells
33
tissue
8
primary cell
5
cell line
Organ
33
pancreas
8
blood
8
bodily fluid
Project
49
AMP
39
T1D
Genome assembly (visualization)
hg19
180
GRCh38
Lab
951
AMP-T2D consortium
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
88
Kyle Gaulton, UCSD
47
KPMP
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
assay_title!
pCHi-C
assembly!
hg19
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
snATAC-seq
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
6
11
11
pancreas
4
1
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
2
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