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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
84
ChIP-seq
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
101
Transcription
84
DNA binding
11
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
45
May, 2020
21
February, 2023
Available data
180
bam
180
bigWig
96
tsv
84
bed narrowPeak
84
tagAlign
Organism
218
Homo sapiens
Biosample type
196
primary cell
17
tissue
5
cell line
Organ
16
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
218
T1D
AMP
Genome assembly (visualization)
180
GRCh38
180
hg19
Lab
276
Klaus Kaestner, Upenn
218
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
assay_title!
snATAC-seq
award.project!
AMP
BIOSAMPLE
ASSAY
218 results
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total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
84
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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tissue
islet of Langerhans
5
11
thymus
1
cell line
EndoC_BH1
3
2
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