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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
29
ATAC-seq
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
56
Transcription
29
DNA accessibility
Date released
May, 2021
45
May, 2020
24
May, 2022
21
February, 2023
Available data
69
bam
45
bigWig
45
tsv
24
fastq
18
bed narrowPeak
6
txt
Organism
90
Homo sapiens
Biosample type
45
primary cell
40
tissue
5
cell line
Organ
40
pancreas
Project
66
T1D
24
AMP
Genome assembly (visualization)
63
hg19
45
GRCh38
Lab
3746
AMP-T2D consortium
276
Klaus Kaestner, Upenn
136
Katalin Susztak, Upenn
90
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
assay_title!
snATAC-seq
month_released!
May, 2021
BIOSAMPLE
ASSAY
90 results
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total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
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tissue
islet of Langerhans
11
29
cell line
EndoC_BH1
3
2
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