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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
115
total RNA-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
34
DNA accessibility
Date released
22
May, 2021
18
May, 2022
11
February, 2023
Available data
18
bam
18
bed narrowPeak
18
fastq
5
bigWig
Organism
51
Homo sapiens
Biosample type
30
tissue
16
primary cell
5
in vitro differentiated cells
Organ
29
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
28
T1D
23
AMP
Genome assembly (visualization)
23
hg19
Lab
383
AMP-T2D consortium
75
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
49
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
51 results
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ATAC-seq
pCHi-C
tissue
islet of Langerhans
29
thymus
1
primary cell
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
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in vitro differentiated cells
embryonic stem cell
5
See all biosamples
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