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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
56
total RNA-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
84
DNA binding
56
Transcription
29
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
May, 2020
23
February, 2023
16
January, 2021
Available data
135
bam
135
bigWig
84
bed narrowPeak
84
tagAlign
51
tsv
Organism
191
Homo sapiens
Biosample type
159
primary cell
27
tissue
5
cell line
Organ
26
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
191
T1D
107
AMP
Genome assembly (visualization)
135
GRCh38
135
hg19
Lab
191
Kyle Gaulton, UCSD
8
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
May, 2020
BIOSAMPLE
ASSAY
191 results
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ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
51
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
5
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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