Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
12
total RNA-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
Assay category
39
DNA accessibility
12
Transcription
Date released
24
May, 2022
23
February, 2023
8
January, 2021
2
May, 2021
Available data
24
bam
24
fastq
18
bed narrowPeak
6
txt
Organism
57
Homo sapiens
Biosample type
primary cell
52
tissue
in vitro differentiated cells
5
cell line
Organ
51
pancreas
1
thymus
Project
32
T1D
25
AMP
Genome assembly (visualization)
18
hg19
Lab
3048
AMP-T2D consortium
142
Katalin Susztak, Upenn
57
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
biosample_type!
in vitro differentiated cells
primary cell
BIOSAMPLE
ASSAY
57 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
tissue
islet of Langerhans
29
11
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
Download