Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
18
snATAC-seq
17
pCHi-C
12
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
47
DNA accessibility
12
Transcription
Date released
24
May, 2022
23
February, 2023
18
May, 2021
16
January, 2021
Available data
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
81
Homo sapiens
Biosample type
52
tissue
in vitro differentiated cells
24
primary cell
5
cell line
Organ
51
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
56
T1D
25
AMP
Genome assembly (visualization)
18
hg19
Lab
962
AMP-T2D consortium
314
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
81
Kyle Gaulton, UCSD
47
KPMP
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
biosample_type!
in vitro differentiated cells
files.file_type!
bigWig
BIOSAMPLE
ASSAY
81 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
snATAC-seq
pCHi-C
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
6
11
pancreas
4
1
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
3
2
See all biosamples
Download