Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
98
total RNA-seq
17
pCHi-C
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
117
DNA binding
98
Transcription
8
DNA accessibility
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
187
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
Available data
215
bigWig
180
bam
114
bed narrowPeak
96
tsv
84
tagAlign
2
bed bed3+
Organism
245
Homo sapiens
Biosample type
239
primary cell
in vitro differentiated cells
5
cell line
1
tissue
Organ
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
210
T1D
35
AMP
Genome assembly (visualization)
215
hg19
180
GRCh38
Lab
2850
AMP-T2D consortium
245
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Bing Ren, UCSD
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
5
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
pancreas
BIOSAMPLE
ASSAY
245 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
cell line
EndoC_BH1
3
2
tissue
thymus
1
See all biosamples
Download