Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
total RNA-seq
29
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
Assay category
110
Transcription
47
DNA accessibility
3
DNA binding
Target of assay
114
histone
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
74
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
16
January, 2021
Available data
120
bam
101
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
182
Homo sapiens
Biosample type
125
primary cell
52
tissue
in vitro differentiated cells
5
cell line
Organ
51
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
30
AMP
Genome assembly (visualization)
119
hg19
96
GRCh38
Lab
2819
AMP-T2D consortium
324
Klaus Kaestner, Upenn
182
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
biosample_type!
in vitro differentiated cells
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
182 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
ChIP-seq
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
1
3
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
11
29
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
Download