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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
34
ATAC-seq
17
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
pCHi-C
Assay category
37
DNA binding
36
DNA accessibility
17
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
49
May, 2021
24
May, 2022
23
February, 2023
January, 2021
Available data
24
bam
24
fastq
18
bed narrowPeak
6
txt
5
bigWig
Organism
96
Homo sapiens
Biosample type
primary cell
47
in vitro differentiated cells
44
tissue
5
cell line
Organ
43
pancreas
1
thymus
Project
72
AMP
24
T1D
Genome assembly (visualization)
23
hg19
Lab
3388
AMP-T2D consortium
142
Katalin Susztak, Upenn
96
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
biosample_type!
primary cell
month_released!
January, 2021
BIOSAMPLE
ASSAY
96 results
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ChIP-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
pCHi-C
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
29
11
2
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
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