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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
33
ChIP-seq
16
pCHi-C
8
snATAC-seq
Assay category
98
Transcription
33
DNA binding
8
DNA accessibility
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
3
control
Date released
102
May, 2021
45
May, 2020
8
January, 2021
Available data
215
bigWig
180
bam
114
bed narrowPeak
96
tsv
tagAlign
2
bed bed3+
Organism
155
Homo sapiens
Biosample type
155
primary cell
52
tissue
47
in vitro differentiated cells
5
cell line
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
120
T1D
35
AMP
Genome assembly (visualization)
131
hg19
96
GRCh38
Lab
508
AMP-T2D consortium
324
Klaus Kaestner, Upenn
155
Kyle Gaulton, UCSD
1
ITG
Audit category:
5
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
155 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
33
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
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