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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
29
ATAC-seq
18
snATAC-seq
17
pCHi-C
17
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
47
DNA accessibility
17
Transcription
Date released
24
May, 2022
23
February, 2023
23
May, 2021
16
January, 2021
Available data
120
bam
bigWig
96
tsv
24
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
86
Homo sapiens
Biosample type
52
tissue
24
primary cell
5
cell line
5
in vitro differentiated cells
Organ
51
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
56
T1D
30
AMP
Genome assembly (visualization)
18
hg19
Lab
613
AMP-T2D consortium
314
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
86
Kyle Gaulton, UCSD
47
KPMP
20
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bigWig
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
86 results
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ATAC-seq
snATAC-seq
pCHi-C
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
6
11
pancreas
4
1
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
cell line
EndoC_BH1
3
2
in vitro differentiated cells
embryonic stem cell
5
See all biosamples
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