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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
total RNA-seq
70
ChIP-seq
18
snATAC-seq
17
pCHi-C
16
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
109
Transcription
70
DNA binding
34
DNA accessibility
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
151
May, 2021
45
May, 2020
23
February, 2023
16
January, 2021
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
tagAlign
fastq
6
txt
2
bed bed3+
Organism
235
Homo sapiens
Biosample type
155
primary cell
47
in vitro differentiated cells
28
tissue
5
cell line
Organ
27
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
83
AMP
Genome assembly (visualization)
136
hg19
96
GRCh38
Lab
2474
AMP-T2D consortium
235
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
5
inconsistent ontology term
files.file_type!
fastq
tagAlign
BIOSAMPLE
ASSAY
235 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
33
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
5
37
5
tissue
islet of Langerhans
5
6
11
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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