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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
18
snATAC-seq
17
pCHi-C
16
ATAC-seq
13
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
34
DNA accessibility
13
Transcription
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
184
May, 2021
23
February, 2023
16
January, 2021
Available data
220
bigWig
204
bam
132
bed narrowPeak
tsv
84
tagAlign
fastq
6
txt
2
bed bed3+
Organism
223
Homo sapiens
Biosample type
143
primary cell
47
in vitro differentiated cells
28
tissue
5
cell line
Organ
27
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
140
T1D
83
AMP
Genome assembly (visualization)
124
hg19
84
GRCh38
Lab
1498
AMP-T2D consortium
223
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
tsv
BIOSAMPLE
ASSAY
223 results
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Clear Filters
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
2
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
6
11
5
pancreas
4
1
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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