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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
16
pCHi-C
8
snATAC-seq
2
total RNA-seq
Assay category
117
DNA binding
8
DNA accessibility
2
Transcription
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
135
May, 2021
8
January, 2021
Available data
215
bigWig
180
bam
114
bed narrowPeak
tsv
84
tagAlign
2
bed bed3+
Organism
143
Homo sapiens
Biosample type
143
primary cell
52
tissue
47
in vitro differentiated cells
5
cell line
Organ
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
108
T1D
35
AMP
Genome assembly (visualization)
119
hg19
84
GRCh38
Lab
356
AMP-T2D consortium
318
Klaus Kaestner, Upenn
143
Kyle Gaulton, UCSD
1
ITG
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
pCHi-C
snATAC-seq
total RNA-seq
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
2
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
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