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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
54
ATAC-seq
39
total RNA-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
72
DNA accessibility
39
Transcription
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
184
May, 2021
64
May, 2022
23
February, 2023
16
January, 2021
Available data
240
bigWig
204
bam
152
bed narrowPeak
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
287
Homo sapiens
Biosample type
143
primary cell
92
tissue
47
in vitro differentiated cells
5
cell line
Organ
51
pancreas
40
liver
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
147
AMP
140
T1D
Genome assembly (visualization)
162
hg19
84
GRCh38
Lab
2424
AMP-T2D consortium
318
Klaus Kaestner, Upenn
247
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
28
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
BIOSAMPLE
ASSAY
287 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
2
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
29
11
6
liver
20
20
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
37
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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