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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
34
ATAC-seq
19
total RNA-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
94
DNA binding
52
DNA accessibility
19
Transcription
Target of assay
134
histone
134
histone modification
74
broad histone mark
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
124
May, 2021
24
May, 2022
23
February, 2023
16
January, 2021
Available data
170
bigWig
164
bam
tsv
82
bed narrowPeak
44
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
187
Homo sapiens
Biosample type
93
primary cell
52
tissue
37
in vitro differentiated cells
5
cell line
Organ
51
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
100
T1D
87
AMP
Genome assembly (visualization)
92
hg19
44
GRCh38
Lab
1987
AMP-T2D consortium
318
Klaus Kaestner, Upenn
187
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
26
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
tsv
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
187 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
44
1
CD8-positive, alpha-beta T cell
23
2
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
29
11
6
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
27
5
5
cell line
EndoC_BH1
3
2
See all biosamples
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