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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
16
ATAC-seq
11
total RNA-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
pCHi-C
Assay category
37
DNA binding
26
DNA accessibility
11
Transcription
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
5
RNA binding protein
5
control
Date released
49
May, 2021
May, 2022
23
February, 2023
8
January, 2021
Available data
5
bigWig
Organism
80
Homo sapiens
Biosample type
primary cell
47
in vitro differentiated cells
28
tissue
5
cell line
Organ
27
pancreas
1
thymus
Project
48
AMP
32
T1D
Genome assembly (visualization)
5
hg19
Lab
3386
AMP-T2D consortium
142
Katalin Susztak, Upenn
80
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
lab.title!
Anna Gloyn, Oxford
biosample_type!
primary cell
month_released!
May, 2022
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
pCHi-C
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
11
5
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
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