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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
67
ChIP-seq
5
ATAC-seq
Assay category
98
Transcription
67
DNA binding
5
DNA accessibility
Target of assay
114
histone
114
histone modification
64
broad histone mark
narrow histone mark
3
control
Date released
125
May, 2021
45
May, 2020
Available data
170
bigWig
164
bam
96
tsv
82
bed narrowPeak
44
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
170
Homo sapiens
Biosample type
165
primary cell
5
in vitro differentiated cells
Project
140
T1D
30
AMP
Genome assembly (visualization)
170
hg19
140
GRCh38
Lab
2486
AMP-T2D consortium
170
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
12
Bing Ren, UCSD
10
Klaus Kaestner, Upenn
5
Struan F.A. Grant, CHOP
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
lab.title!
Anna Gloyn, Oxford
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
170 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
44
CD8-positive, alpha-beta T cell
4
23
B cell
2
T follicular helper cell
2
T-helper 1 cell
2
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in vitro differentiated cells
embryonic stem cell
5
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