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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
snATAC-seq
11
ATAC-seq
11
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
29
DNA accessibility
11
Transcription
Date released
May, 2021
23
February, 2023
16
January, 2021
6
May, 2022
Available data
6
bam
6
fastq
6
txt
Organism
45
Homo sapiens
Biosample type
32
tissue
8
primary cell
5
cell line
Organ
32
pancreas
8
blood
8
bodily fluid
Project
39
T1D
6
AMP
Genome assembly (visualization)
hg19
45
GRCh38
Lab
964
AMP-T2D consortium
321
Klaus Kaestner, Upenn
Katalin Susztak, Upenn
47
KPMP
45
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
21
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
lab.title!
Katalin Susztak, Upenn
month_released!
May, 2021
assembly!
hg19
BIOSAMPLE
ASSAY
45 results
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snATAC-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
6
11
11
pancreas
4
primary cell
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
3
2
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