Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
total RNA-seq
8
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
45
Transcription
8
DNA accessibility
Date released
May, 2021
45
May, 2020
8
January, 2021
5
February, 2023
Available data
45
bam
45
bigWig
45
tsv
Organism
58
Homo sapiens
Biosample type
53
primary cell
5
cell line
Organ
pancreas
8
blood
8
bodily fluid
Project
58
T1D
Genome assembly (visualization)
45
GRCh38
45
hg19
Lab
3083
AMP-T2D consortium
172
Klaus Kaestner, Upenn
Katalin Susztak, Upenn
58
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
Audit category:
4
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
month_released!
May, 2021
organ_slims!
pancreas
BIOSAMPLE
ASSAY
58 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 21 more…
cell line
EndoC_BH1
3
2
See all biosamples
Download