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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
159
total RNA-seq
154
ChIP-seq
98
ATAC-seq
22
snATAC-seq
17
pCHi-C
11
single cell RNA-seq
1
Hi-C
Assay category
170
Transcription
154
DNA binding
120
DNA accessibility
1
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
128
August, 2021
45
May, 2020
24
May, 2022
February, 2023
16
January, 2021
14
May, 2023
Available data
220
bigWig
204
bam
196
bed narrowPeak
96
tsv
84
tagAlign
64
xls
63
txt
24
fastq
2
bed bed3+
1
hic
Organism
462
Homo sapiens
Biosample type
239
primary cell
176
tissue
47
in vitro differentiated cells
Organ
142
kidney
33
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
249
AMP
213
T1D
Genome assembly (visualization)
255
GRCh38
239
hg19
Lab
3809
AMP-T2D consortium
320
Kyle Gaulton, UCSD
248
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
462 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
single cell RNA-seq
Hi-C
primary cell
monocyte
53
84
1
CD8-positive, alpha-beta T cell
4
33
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
kidney
49
75
6
11
1
islet of Langerhans
6
18
4
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
37
5
See all biosamples
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