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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
total RNA-seq
154
ChIP-seq
85
single cell RNA-seq
ATAC-seq
66
snATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
292
Transcription
154
DNA binding
66
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
230
May, 2021
101
May, 2022
88
February, 2023
56
September, 2020
45
February, 2021
45
May, 2020
16
January, 2021
3
October, 2022
Available data
215
bigWig
186
bam
165
fastq
114
bed narrowPeak
114
zippedFastqFolder
102
tsv
84
tagAlign
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
584
Homo sapiens
Biosample type
514
primary cell
42
in vitro differentiated cells
23
tissue
5
cell line
Organ
125
pancreas
103
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
275
HPAP
225
T1D
84
AMP
Genome assembly (visualization)
218
hg19
180
GRCh38
Lab
3569
AMP-T2D consortium
309
Kyle Gaulton, UCSD
275
Klaus Kaestner, Upenn
67
Katalin Susztak, Upenn
47
KPMP
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
584 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
31
1
exocrine cell
39
CD8-positive, alpha-beta T cell
4
33
1
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in vitro differentiated cells
embryonic stem cell
5
37
tissue
islet of Langerhans
11
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
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