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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
total RNA-seq
85
single cell RNA-seq
84
ChIP-seq
66
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
278
Transcription
126
DNA accessibility
84
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
152
May, 2021
134
May, 2022
99
February, 2023
59
September, 2020
45
February, 2021
45
May, 2020
16
January, 2021
7
August, 2020
3
October, 2022
Available data
190
bigWig
180
bam
169
fastq
153
zippedFastqFolder
102
tsv
84
bed narrowPeak
84
tagAlign
3
bedpe bed3+
3
cool
3
hic
Organism
560
Homo sapiens
Biosample type
528
primary cell
27
tissue
5
cell line
Organ
178
pancreas
152
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
324
HPAP
236
T1D
AMP
Genome assembly (visualization)
190
GRCh38
183
hg19
Lab
324
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
5
inconsistent ontology term
award.project!
AMP
BIOSAMPLE
ASSAY
560 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
monocyte
53
84
1
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
+ See 36 more…
tissue
islet of Langerhans
5
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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