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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
29
ATAC-seq
17
pCHi-C
14
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
33
DNA binding
31
DNA accessibility
14
Transcription
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
3
control
Date released
53
May, 2021
24
May, 2022
23
February, 2023
January, 2021
Available data
48
bed narrowPeak
35
bigWig
24
bam
24
fastq
6
txt
2
bed bed3+
Organism
100
Homo sapiens
Biosample type
51
primary cell
in vitro differentiated cells
44
tissue
5
cell line
Organ
43
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
60
AMP
40
T1D
Genome assembly (visualization)
233
hg19
GRCh38
Lab
1019
AMP-T2D consortium
314
Klaus Kaestner, Upenn
100
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
month_released!
January, 2021
assembly!
GRCh38
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
primary cell
CD8-positive, alpha-beta T cell
33
1
2
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
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tissue
islet of Langerhans
29
11
2
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
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