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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
70
total RNA-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
70
Transcription
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
230
May, 2021
May, 2020
10
February, 2023
6
May, 2022
Available data
170
bigWig
141
bam
114
bed narrowPeak
84
tagAlign
51
tsv
6
fastq
6
txt
2
bed bed3+
Organism
246
Homo sapiens
Biosample type
186
primary cell
42
in vitro differentiated cells
13
tissue
5
cell line
Organ
12
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
162
T1D
84
AMP
Genome assembly (visualization)
170
hg19
135
GRCh38
Lab
3154
AMP-T2D consortium
246
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
1
inconsistent ontology term
month_released!
May, 2020
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
246 results
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ChIP-seq
total RNA-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
51
1
CD8-positive, alpha-beta T cell
33
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
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in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
11
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
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