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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
17
pCHi-C
8
total RNA-seq
5
ATAC-seq
Assay category
70
DNA binding
8
Transcription
5
DNA accessibility
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
100
May, 2021
23
February, 2023
16
January, 2021
Available data
175
bigWig
bam
114
bed narrowPeak
84
tagAlign
51
tsv
2
bed bed3+
Organism
100
Homo sapiens
Biosample type
51
primary cell
47
in vitro differentiated cells
2
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
pancreas
1
thymus
Project
83
AMP
17
T1D
Genome assembly (visualization)
40
hg19
Lab
100
Kyle Gaulton, UCSD
22
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
pCHi-C
total RNA-seq
ATAC-seq
primary cell
CD8-positive, alpha-beta T cell
33
1
2
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
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in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
pancreas
1
thymus
1
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