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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
59
total RNA-seq
17
pCHi-C
5
ATAC-seq
Assay category
94
DNA binding
59
Transcription
5
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
175
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
16
January, 2021
Available data
125
bigWig
95
bam
64
bed narrowPeak
51
tsv
44
tagAlign
2
bed bed3+
Organism
175
Homo sapiens
Biosample type
136
primary cell
37
in vitro differentiated cells
2
tissue
Organ
1
bone element
1
bone marrow
1
connective tissue
1
pancreas
1
thymus
Project
112
T1D
63
AMP
Genome assembly (visualization)
125
hg19
95
GRCh38
Lab
175
Kyle Gaulton, UCSD
160
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
175 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
primary cell
monocyte
44
51
1
CD8-positive, alpha-beta T cell
23
2
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 10 more…
in vitro differentiated cells
embryonic stem cell
27
5
5
tissue
pancreas
1
thymus
1
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