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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
125
total RNA-seq
35
ATAC-seq
18
snATAC-seq
17
pCHi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
1
whole genome sequencing assay
Assay category
160
DNA binding
125
Transcription
53
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
137
histone
137
histone modification
75
broad histone mark
62
narrow histone mark
23
transcription factor
control
6
RNA binding protein
Date released
227
May, 2021
45
May, 2020
32
August, 2021
24
May, 2022
23
February, 2023
16
January, 2021
2
March, 2019
Available data
231
bigWig
204
bam
146
bed narrowPeak
106
tsv
84
tagAlign
24
fastq
6
txt
2
bed bed3+
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
369
Homo sapiens
Biosample type
236
primary cell
56
tissue
42
in vitro differentiated cells
35
cell line
Organ
55
pancreas
27
liver
8
blood
8
bodily fluid
2
kidney
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
236
T1D
133
AMP
Genome assembly (visualization)
252
hg19
181
GRCh38
Lab
3586
AMP-T2D consortium
335
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
target.investigated_as!
control
BIOSAMPLE
ASSAY
369 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
whole genome sequencing assay
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
30
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
12
30
6
2
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
32
5
5
cell line
HepG2
14
9
2
1
1
EndoC_BH1
3
2
HEK293T
2
Synthesized DNA
1
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