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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
total RNA-seq
54
ATAC-seq
20
ChIP-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
135
Transcription
72
DNA accessibility
20
DNA binding
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
101
May, 2021
64
May, 2022
45
May, 2020
23
February, 2023
16
January, 2021
Available data
126
bigWig
120
bam
96
tsv
38
bed narrowPeak
24
fastq
6
txt
2
bed bed3+
Organism
249
Homo sapiens
Biosample type
125
primary cell
92
tissue
27
in vitro differentiated cells
5
cell line
Organ
51
pancreas
40
liver
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
97
AMP
Genome assembly (visualization)
144
hg19
96
GRCh38
Lab
3068
AMP-T2D consortium
324
Klaus Kaestner, Upenn
209
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
249 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
3
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
11
29
6
liver
20
20
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
17
cell line
EndoC_BH1
3
2
See all biosamples
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