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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
50
ATAC-seq
48
snATAC-seq
47
WGBS
Assay category
177
Transcription
98
DNA accessibility
47
DNA methylation
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
7
August, 2020
1
March, 2019
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
Organism
322
Homo sapiens
Biosample type
321
primary cell
1
tissue
Organ
150
pancreas
149
epithelium
Project
321
HPAP
1
AMP
Genome assembly (visualization)
10
GRCh38
Lab
3886
AMP-T2D consortium
343
Kyle Gaulton, UCSD
321
Klaus Kaestner, Upenn
141
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
audit script error
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
322 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
pancreatic acinar cell
4
tissue
islet of Langerhans
1
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