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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
47
WGBS
10
MeRIP-seq
3
Hi-C
Assay category
177
Transcription
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
76
February, 2023
74
May, 2022
56
September, 2020
18
February, 2021
10
November, 2020
3
October, 2022
Available data
132
fastq
93
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
237
Homo sapiens
Biosample type
227
primary cell
6
cell line
4
tissue
Organ
113
pancreas
109
epithelium
Project
227
HPAP
10
AMP
Genome assembly (visualization)
3
hg19
Lab
3350
AMP-T2D consortium
291
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
0
Mark McCarthy, Oxford
Audit category:
6
inconsistent ontology term
3
audit script error
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
237 results
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total RNA-seq
single cell RNA-seq
WGBS
MeRIP-seq
Hi-C
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
pancreatic acinar cell
1
cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
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