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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
48
snATAC-seq
47
WGBS
44
ATAC-seq
3
Hi-C
Assay category
177
Transcription
92
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
76
February, 2023
59
September, 2020
45
February, 2021
August, 2020
3
October, 2022
2
March, 2019
Available data
163
fastq
153
zippedFastqFolder
6
tsv
3
bedpe bed3+
3
bigWig
3
cool
3
hic
1
bam
1
bed broadPeak
Organism
319
Homo sapiens
Biosample type
317
primary cell
2
tissue
Organ
147
pancreas
145
epithelium
Project
317
HPAP
2
AMP
Genome assembly (visualization)
4
GRCh38
4
hg19
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
317
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
month_released!
August, 2020
BIOSAMPLE
ASSAY
319 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ATAC-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
31
24
1
pancreatic beta cell
11
16
14
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
islet of Langerhans
2
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