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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
total RNA-seq
70
ChIP-seq
23
ATAC-seq
17
pCHi-C
16
snATAC-seq
10
MeRIP-seq
Assay category
110
Transcription
70
DNA binding
39
DNA accessibility
Target of assay
50
histone
50
histone modification
30
broad histone mark
20
narrow histone mark
13
control
12
transcription factor
5
RNA binding protein
5
nucleotide modification
Date released
151
May, 2021
45
May, 2020
24
May, 2022
February, 2023
16
January, 2021
10
November, 2020
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
tagAlign
24
fastq
6
txt
2
bed bed3+
Organism
246
Homo sapiens
Biosample type
155
primary cell
47
in vitro differentiated cells
38
tissue
6
cell line
Organ
43
pancreas
8
blood
8
bodily fluid
6
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
129
T1D
117
AMP
Genome assembly (visualization)
154
hg19
96
GRCh38
Lab
3495
AMP-T2D consortium
248
Klaus Kaestner, Upenn
236
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
11
inconsistent ontology term
month_released!
February, 2023
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
246 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
snATAC-seq
MeRIP-seq
primary cell
monocyte
53
1
CD8-positive, alpha-beta T cell
4
33
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
5
37
5
tissue
islet of Langerhans
6
18
4
4
pancreas
1
4
thymus
1
cell line
EndoC_BH1
6
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