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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
single cell RNA-seq
18
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
2
ATAC-seq
1
whole genome sequencing assay
Assay category
57
Transcription
18
DNA binding
3
3D chromatin structure
2
DNA accessibility
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
47
September, 2023
36
August, 2021
2
March, 2019
1
October, 2017
Available data
15
bigWig
14
bed narrowPeak
10
tsv
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bedpe
1
fastq
1
vcf
Organism
86
Homo sapiens
Biosample type
52
tissue
34
cell line
Organ
49
kidney
31
liver
5
pancreas
Project
47
KPMP
39
AMP
Genome assembly (visualization)
18
hg19
2
GRCh38
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
86 results
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Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
tissue
kidney
47
islet of Langerhans
1
2
2
cell line
HepG2
18
9
2
1
1
HEK293T
2
Synthesized DNA
1
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