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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
total RNA-seq
85
single cell RNA-seq
47
WGBS
18
ChIP-seq
6
Hi-C
5
STARR-seq
2
Capture-C
1
whole genome sequencing assay
Assay category
187
Transcription
DNA accessibility
47
DNA methylation
18
DNA binding
6
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
76
February, 2023
74
May, 2022
56
September, 2020
38
August, 2021
18
February, 2021
3
October, 2022
1
March, 2019
Available data
132
fastq
93
zippedFastqFolder
16
tsv
14
bed narrowPeak
14
bigWig
5
bedpe bed3+
5
hic
3
cool
2
bed bed3+
1
bedpe
1
vcf
Organism
266
Homo sapiens
Biosample type
227
primary cell
34
cell line
3
tissue
2
in vitro differentiated cells
Organ
106
pancreas
103
epithelium
31
liver
2
connective tissue
2
kidney
Project
227
HPAP
39
AMP
Genome assembly (visualization)
21
hg19
Lab
3350
AMP-T2D consortium
291
Kyle Gaulton, UCSD
227
Klaus Kaestner, Upenn
61
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
37
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
3
audit script error
1
inconsistent ontology term
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
266 results
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Clear Filters
total RNA-seq
single cell RNA-seq
WGBS
ChIP-seq
Hi-C
STARR-seq
Capture-C
whole genome sequencing assay
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
1
exocrine cell
39
pancreatic beta cell
11
16
1
pancreatic acinar cell
1
cell line
HepG2
9
18
1
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
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