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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
54
ATAC-seq
48
snATAC-seq
47
WGBS
3
Hi-C
2
Capture-C
Assay category
54
DNA accessibility
Date released
39
May, 2022
7
August, 2020
3
February, 2023
3
September, 2020
2
August, 2021
Available data
39
zippedFastqFolder
15
bigWig
10
fastq
4
bed narrowPeak
3
bed bedgraph
3
txt
Organism
54
Homo sapiens
Biosample type
49
primary cell
5
in vitro differentiated cells
Organ
49
epithelium
49
pancreas
2
connective tissue
Project
49
HPAP
5
AMP
Genome assembly (visualization)
10
GRCh38
5
hg19
Lab
343
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
54 results
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ATAC-seq
primary cell
pancreatic alpha cell
29
pancreatic beta cell
16
pancreatic acinar cell
4
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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