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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1659ChIP-seq
  • 1241total RNA-seq
  • 348ATAC-seq
  • 217single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 40pCHi-C
  • 28WGBS
  • 26Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3snDrop-seq
  • 2snATAC-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
Assay category
  • 1659DNA binding
  • 1476Transcription
  • 567DNA accessibility
  • 50DNA methylation
  • 263D chromatin structure
Target of assay
  • 845histone modification
  • 844histone
  • 486transcription factor
  • 437narrow histone mark
  • 406broad histone mark
  • 326control
  • 103RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 670February, 2021
  • 411August, 2017
  • 406November, 2017
  • 314October, 2019
  • 296May, 2020
  • 218June, 2019
  • 168July, 2018
  • 164May, 2021
  • 155August, 2021
  • 120May, 2019
  • 108July, 2019
  • 106February, 2023
  • 94December, 2017
  • 88November, 2018
  • 80April, 2019
  • 76October, 2018
  • 73September, 2018
  • 64March, 2020
  • 61November, 2019
  • 49April, 2018
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 25February, 2020
  • 22October, 2017
  • 11September, 2017
  • 10December, 2019
  • 8January, 2018
  • 6November, 2020
  • 4August, 2018
  • 3June, 2018
  • 2May, 2022
  • 1August, 2022
  • 1May, 2023
  • 1October, 2022
Available data
  • 3187bam
  • 2864bigWig
  • 1547bed narrowPeak
  • 1488tsv
  • 1163fastq
  • 1042bigBed narrowPeak
  • 320bed broadPeak
  • 314tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 98txt
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 18bedpe bed3+
  • 16hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 3909Homo sapiens
Biosample type
  • 2425tissue
  • 615cell line
  • 524primary cell
  • 347in vitro differentiated cells
  • 8stem cell
Organ
  • 725pancreas
  • 720liver
  • 683connective tissue
  • 491adipose tissue
  • 366epithelium
  • 353heart
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 163kidney
  • 158bone element
  • 141artery
  • 122limb
  • 96musculature of body
  • 61blood
  • 61bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lung
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 3911AMP
  • 8T1D
Genome assembly (visualization)
  • 2932hg19
  • 2818GRCh38
  • 5hg18
Lab
  • 3912AMP-T2D consortium
  • 343Kyle Gaulton, UCSD
  • 324Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 7Struan F.A. Grant, CHOP
  • 4Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 341inconsistent ontology term
  • 28inconsistent control
  • 12audit script error
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
BIOSAMPLE
ASSAY

3919 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
pCHi-C
WGBS
Hi-C
RRBS
small RNA-seq
FAIRE-seq
GRO-seq
Capture-C
snDrop-seq
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
tissue
islet of Langerhans71280346141111
adipose tissue2382313
liver1451471213111
bone element84
heart left ventricle35321831411
cell line
HepG236051211
EndoC_BH1153319121
smooth muscle cell of the coronary artery6528
GM12878601
Panc11311
primary cell
pancreatic beta cell1310712
pancreatic alpha cell1310612
pancreatic ductal cell134410
pancreatic acinar cell84512
naive thymus-derived CD4-positive, alpha-beta T cell2122
in vitro differentiated cells
adipocyte675811
cardiomyocytes359
neural progenitor cell21710
pancreatic endoderm1841
cardiac precursors (cardiac muscle cell)1911
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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