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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
6
ATAC-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
18
DNA binding
10
Transcription
6
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
38
August, 2021
3
February, 2023
2
March, 2019
Available data
19
bigWig
18
bed narrowPeak
10
tsv
3
bed bedgraph
3
txt
bed bed3+
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
43
Homo sapiens
Biosample type
34
cell line
5
in vitro differentiated cells
4
tissue
Organ
31
liver
4
pancreas
2
connective tissue
2
kidney
Project
43
AMP
Genome assembly (visualization)
22
hg19
1
GRCh38
Lab
3643
AMP-T2D consortium
341
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
5
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
9
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
tissue
islet of Langerhans
1
1
2
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