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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
4
ATAC-seq
Assay category
13
DNA binding
4
DNA accessibility
Target of assay
11
transcription factor
3
histone
3
histone modification
2
narrow histone mark
RNA binding protein
1
broad histone mark
Date released
15
August, 2021
2
February, 2023
Available data
18
bigWig
17
bed narrowPeak
10
tsv
3
bed bedgraph
3
txt
2
bed bed3+
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
17
Homo sapiens
Biosample type
13
cell line
4
in vitro differentiated cells
Organ
13
liver
2
connective tissue
Project
17
AMP
Genome assembly (visualization)
17
hg19
Lab
1444
AMP-T2D consortium
132
Kyle Gaulton, UCSD
64
Katalin Susztak, Upenn
35
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
ATAC-seq
cell line
HepG2
13
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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