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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ATAC-seq
3
STARR-seq
2
Capture-C
2
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
total RNA-seq
Assay category
6
DNA accessibility
5
Transcription
2
3D chromatin structure
Date released
9
August, 2021
4
March, 2023
3
February, 2023
2
March, 2019
Available data
5
bigWig
4
bed narrowPeak
3
bed bedgraph
3
txt
2
bed bed3+
1
bedpe
1
bedpe bed3+
1
hic
1
tsv
Organism
14
Homo sapiens
Biosample type
7
in vitro differentiated cells
5
cell line
4
tissue
2
stem cell
Organ
liver
4
connective tissue
4
pancreas
2
kidney
Project
14
AMP
4
community
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
3192
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
18 results
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ATAC-seq
STARR-seq
Capture-C
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
total RNA-seq
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
EndoC-BH1
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
stem cell
SB Ad3.1
1
1
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