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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
7
ChIP-seq
5
STARR-seq
2
ATAC-seq
2
Capture-C
2
Hi-C
1
whole genome sequencing assay
Assay category
10
Transcription
7
DNA binding
2
3D chromatin structure
2
DNA accessibility
1
DNA sequencing
Target of assay
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
29
August, 2021
3
February, 2023
2
March, 2019
Available data
10
tsv
5
bed narrowPeak
5
bigWig
2
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
29
Homo sapiens
Biosample type
23
cell line
4
in vitro differentiated cells
2
tissue
Organ
20
liver
4
connective tissue
2
kidney
2
pancreas
Project
29
AMP
Genome assembly (visualization)
8
hg19
Lab
151
AMP-T2D consortium
128
Katalin Susztak, Upenn
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
29 results
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total RNA-seq
ChIP-seq
STARR-seq
ATAC-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
9
7
2
1
1
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
tissue
islet of Langerhans
1
1
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