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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
55
ATAC-seq
48
snATAC-seq
47
WGBS
3
Hi-C
2
Capture-C
Assay category
177
Transcription
103
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
79
February, 2023
59
September, 2020
45
February, 2021
7
August, 2020
4
August, 2021
3
October, 2022
1
October, 2017
Available data
170
fastq
153
zippedFastqFolder
16
bigWig
6
tsv
4
bed narrowPeak
3
bed bedgraph
3
bedpe bed3+
3
cool
3
hic
3
txt
2
bed bed3+
1
bed broadPeak
Organism
332
Homo sapiens
Biosample type
324
primary cell
7
in vitro differentiated cells
1
tissue
Organ
153
pancreas
152
epithelium
4
connective tissue
Project
324
HPAP
8
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
3912
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
332 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
Capture-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
islet of Langerhans
1
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