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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
snATAC-seq
5
STARR-seq
3
Hi-C
ATAC-seq
1
whole genome sequencing assay
Assay category
Transcription
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
26
August, 2021
1
March, 2019
Available data
14
bed narrowPeak
14
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
27
Homo sapiens
Biosample type
25
cell line
2
tissue
Organ
22
liver
2
kidney
2
pancreas
Project
27
AMP
Genome assembly (visualization)
16
hg19
Lab
2091
AMP-T2D consortium
176
Kyle Gaulton, UCSD
50
Klaus Kaestner, Upenn
40
Patrick T. Ellinor, Broad
27
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Struan F.A. Grant, CHOP
1
ITG
1
Katalin Susztak, Upenn
0
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
snATAC-seq
ATAC-seq
assay_title!!
snATAC-seq
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
18
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
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