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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
7
ATAC-seq
6
WGBS
4
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
Transcription
108
DNA binding
11
DNA accessibility
6
DNA methylation
Target of assay
56
histone
56
histone modification
36
broad histone mark
35
control
20
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
57
August, 2017
39
October, 2019
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
Available data
82
bam
54
bigWig
44
fastq
40
bed narrowPeak
36
bigBed narrowPeak
8
bed bed3+
8
tagAlign
5
bed broadPeak
4
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
tsv
Organism
127
Homo sapiens
Biosample type
127
tissue
1
in vitro differentiated cells
Organ
556
liver
311
pancreas
262
brain
218
epithelium
198
connective tissue
187
heart
169
vasculature
163
blood vessel
145
kidney
115
limb
96
bone element
90
adipose tissue
86
musculature of body
83
artery
61
blood
61
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
128
AMP
Genome assembly (visualization)
54
hg19
52
GRCh38
Lab
128
AMP-T2D consortium
0
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_slims!
Transcription
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
128 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
tibial nerve
35
1
2
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
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in vitro differentiated cells
white fat cell
1
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