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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
snATAC-seq
5
STARR-seq
4
ChIP-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
Transcription
4
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
4
control
Date released
12
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
14
Homo sapiens
Biosample type
11
cell line
3
tissue
Organ
8
liver
3
pancreas
2
kidney
Project
14
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
879
AMP-T2D consortium
89
Klaus Kaestner, Upenn
88
Kyle Gaulton, UCSD
76
Katalin Susztak, Upenn
14
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
0
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
snATAC-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
14 results
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STARR-seq
ChIP-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
2
4
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
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