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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ATAC-seq
snATAC-seq
47
WGBS
4
Hi-C
Assay category
Transcription
124
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Date released
80
May, 2022
65
August, 2021
11
May, 2023
7
August, 2020
6
February, 2021
3
October, 2022
3
September, 2020
Available data
80
zippedFastqFolder
64
bed narrowPeak
64
xls
16
fastq
10
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
175
Homo sapiens
Biosample type
99
primary cell
76
tissue
Organ
99
epithelium
99
pancreas
76
kidney
Project
99
HPAP
76
AMP
Genome assembly (visualization)
85
GRCh38
4
hg19
Lab
2434
AMP-T2D consortium
210
Kyle Gaulton, UCSD
99
Klaus Kaestner, Upenn
76
Katalin Susztak, Upenn
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
0
Xin Sun, UCSD
Audit category:
3
audit script error
assay_slims!
Transcription
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
175 results
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ATAC-seq
WGBS
Hi-C
primary cell
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
tissue
kidney
75
1
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