Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
34
ATAC-seq
snATAC-seq
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
154
DNA binding
Transcription
34
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
159
May, 2021
18
May, 2022
16
February, 2023
Available data
132
bed narrowPeak
122
bigWig
102
bam
84
tagAlign
18
fastq
Organism
193
Homo sapiens
Biosample type
117
primary cell
42
in vitro differentiated cells
29
tissue
5
cell line
Organ
29
pancreas
Project
100
T1D
93
AMP
Genome assembly (visualization)
140
hg19
84
GRCh38
Lab
2394
AMP-T2D consortium
193
Kyle Gaulton, UCSD
99
Klaus Kaestner, Upenn
76
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
0
Xin Sun, UCSD
assay_slims!
Transcription
assay_title!
snATAC-seq
pCHi-C
BIOSAMPLE
ASSAY
193 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
33
in vitro differentiated cells
embryonic stem cell
37
5
tissue
islet of Langerhans
29
cell line
EndoC_BH1
3
2
Download