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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
snATAC-seq
20
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
34
DNA accessibility
20
DNA binding
Target of assay
134
histone
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
42
May, 2021
18
May, 2022
16
February, 2023
Available data
18
bam
18
bed narrowPeak
18
fastq
8
bigWig
Organism
76
Homo sapiens
Biosample type
30
tissue
22
in vitro differentiated cells
19
primary cell
5
cell line
Organ
29
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
43
AMP
33
T1D
Genome assembly (visualization)
26
hg19
Lab
1589
AMP-T2D consortium
99
Klaus Kaestner, Upenn
76
Katalin Susztak, Upenn
76
Kyle Gaulton, UCSD
25
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
0
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
snATAC-seq
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
76 results
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ATAC-seq
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
thymus
1
in vitro differentiated cells
embryonic stem cell
5
17
primary cell
CD8-positive, alpha-beta T cell
3
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
adult endothelial progenitor cell
1
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cell line
EndoC_BH1
3
2
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