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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
snATAC-seq
49
ATAC-seq
47
WGBS
10
MeRIP-seq
3
Hi-C
Assay category
Transcription
49
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
80
May, 2022
10
November, 2020
7
August, 2020
6
February, 2021
3
October, 2022
3
September, 2020
Available data
80
zippedFastqFolder
16
fastq
10
bigWig
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
109
Homo sapiens
Biosample type
99
primary cell
6
cell line
4
tissue
Organ
109
pancreas
105
epithelium
Project
99
HPAP
10
AMP
Genome assembly (visualization)
10
GRCh38
3
hg19
Lab
2434
AMP-T2D consortium
210
Kyle Gaulton, UCSD
99
Klaus Kaestner, Upenn
76
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
Stephen Parker, UMich
0
Xin Sun, UCSD
Audit category:
6
inconsistent ontology term
3
audit script error
assay_slims!
Transcription
assay_title!
snATAC-seq
lab.title!
Stephen Parker, UMich
BIOSAMPLE
ASSAY
109 results
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Clear Filters
ATAC-seq
WGBS
MeRIP-seq
Hi-C
primary cell
pancreatic alpha cell
29
31
1
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
cell line
EndoC_BH1
6
tissue
islet of Langerhans
4
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